News

CAVER cited in Nature

December 16, 2014

CAVER 3.0 was cited in the Nature journal in article called SStructure of the V. cholerae Na+-pumping NADH: quinone oxidoreductase.

CAVER cited in PNAS

October 17, 2014

CAVER 3.0 was cited in Proceedings of the National Academy of Sciences of the United States of America in the article called Structural basis of the regulatory mechanism of the plant CIPK family of protein kinases controlling ion homeostasis and abiotic stress.

CAVER Cited in NATURE

August 23, 2014

CAVER was cited in the NATURE journal in article Structure and mechanism of Zn2+-transporting P-type ATPases published on August 17, 2014.

CAVER Cited in NATURE

August 8, 2014

CAVER was cited in the NATURE journal in article X-ray structure of the mouse serotonin 5-HT3 receptor published on August 3, 2014.

CAVER Cited in PNAS

July 5, 2014

CAVER 3.0 was cited in PLOS ONE in article called Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity.

CAVER in PLOS ONE

July 1, 2014

CAVER 3.0 was cited in PLOS ONE in article called Ensemble Generation and the Influence of Protein Flexibility on Geometric Tunnel Prediction in Cytochrome P450 Enzymes.

CAVER in PLOS ONE

January 27, 2014

CAVER 3.0 was cited in article called Structural Insights into the Mechanism for Recognizing Substrate of the Cytochrome P450 Enzyme TxtE.

CAVER 3.0 in Nature

November 13, 2013

CAVER 3.0 was cited in article called Precision is essential for efficient catalysis in an evolved Kemp eliminase in the Nature journal.

CAVER in PNAS

October 5, 2013

CAVER 3.0 was cited in article called Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter.

CAVER Cited in JACS

February 13, 2013

CAVER was cited in the Journal of the American Chemical Society in article Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the β-Carbonic Anhydrase Family Enzymes published on February 13, 2013.

CAVER Cited in PNAS

February 1, 2013

CAVER was cited in the Proceedings of the National Academy of Sciences journal in article Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex published on February 1, 2013.

CAVER Cited in CHEMISTRY

January 7, 2013

CAVER was cited in Chemistry - A European Journal in article Structural and Dynamic Basis of Human Cytochrome P450 7B1: A Survey of Substrate Selectivity and Major Active Site Access Channels published on January 7, 2013.

CAVER Cited in JBC

June 28, 2012

CAVER was cited in the Journal of Biological Chemistry journal in article A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB. published on June 28, 2012.

CAVER Cited in PLoS ONE

May 4, 2012

CAVER was cited in the PLoS ONE journal in article Structural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella typhimurium D-Cysteine Desulfhydrase published on May 4, 2012.

CAVER Cited in JBC

April 2, 2012

CAVER was cited in the Journal of Biological Chemistry journal in article Sequence Discrimination by DNA-binding Domain of ETS Family Transcription Factor PU.1 Is Linked to Specific Hydration of Protein-DNA Interface published on April 2, 2012.

CAVER Cited in BIOTECH ADVANCES

February 29, 2012

CAVER was cited in the Biotechnology Advances journal in article Software tools for identification, visualization and analysis of protein tunnels and channels published in February 2012.

CAVER Cited in SCIENCE

February 10, 2012

CAVER was cited in the Science journal in article Structural Insight into the Ion-Exchange Mechanism of the Sodium/Calcium Exchanger published on February 10, 2012.

CAVER Cited in JBC

December 30, 2011

CAVER was cited in the Journal of Biological Chemistry journal in article Modulating O2 Reactivity in a Fungal Flavoenzyme published on September 2011.

CAVER Cited in JBC

September 22, 2011

CAVER was cited in the Journal of Biological Chemistry journal in article Modulating O2 Reactivity in a Fungal Flavoenzyme published on September 22, 2011.

CAVER Cited in PLoS ONE

September 7, 2011

CAVER was cited in the PLoS ONE journal in article Molecular Basis of Ligand Dissociation in β-Adrenergic Receptors published on September 7, 2011.

CAVER Cited in PLoS ONE

August 16, 2011

CAVER was cited in the PLoS ONE journal in article Molecular Dynamics Analysis Reveals Structural Insights into Mechanism of Nicotine N-Demethylation Catalyzed by Tobacco Cytochrome P450 Mono-Oxygenase published on August 16, 2011.

CAVER Cited in PNAS

August 9, 2011

CAVER was cited in the Proceedings of the National Academy of Sciences journal in article The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced published on August 9, 2011.

CAVER Cited in NATURE

July 29, 2011

CAVER was cited in the Nature journal in article Crystal structure of a copper-transporting PIB-type ATPase published on June 29, 2011.

CAVER Cited in JBC

June 30, 2011

CAVER was cited in the Journal of Biological Chemistry journal in article Crystal Structure of H2O2-dependent Cytochrome P450SPα with Its Bound Fatty Acid Substrate published on June 2011.

CAVER Cited in JBC

June 28, 2011

CAVER was cited in the Journal of Biological Chemistry in article Structural Basis for the Oxidation of Protein-bound Sulfur by the Sulfur Cycle Molybdohemo-Enzyme Sulfane Dehydrogenase SoxCD published on March 11, 2011.

CAVER Cited in JBC

June 28, 2011

CAVER was cited in the Journal of Biological Chemistry in article A Novel Current Pathway Parallel to the Central Pore in a Mutant Voltage Gated Potassium Channel published on April 15, 2011.

CAVER Cited in JBC

June 28, 2011

CAVER was cited in the Journal of Biological Chemistry in article Chi-Conopeptide and Tricyclic Antidepressant Interactions at the Norepinephrine Transporter Define a New Transporter Model published on June 15, 2007.

CAVER Cited in JBC

June 6, 2011

CAVER was cited in the Journal of Biological Chemistry in article Ligand Binding Induces an Ammonia Channel in 2-Amino-2-Desoxyisochorismate (ADIC) Synthase PHZE published on March 29, 2011.

CAVER Cited in NAR

March 2, 2011

CAVER was cited in the Nucleic Acids Research journal in article Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in non-ribosomal peptide synthesis published on February 3, 2011.

CAVER in JBC

October 21, 2010

CAVER was instrumental for identification of novel binding mode of fatty acids to human cytochrome P450 2E1 published in the Journal of Biological Chemistry.

CAVER in PNAS

October 21, 2010

CAVER enabled prediction of possible cavities for ligand binding of negative regulator of transcription TcaR published in the Proceedings of the National Academy of Sciences of the United States of America.

CAVER in Nature Methods

October 21, 2010

CAVER was covered by the recent review on visualization tools providing insights to important biological questions published in Nature Methods.

CAVER in JBC

January 25, 2010

CAVER has been used for analysis of the SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF, and its interactions with cognate operator published in the Journal of Biological Chemistry.

CAVER in JBC

January 25, 2010

CAVER revealed the network of solvent filled tunnels in the glutaconyl-CoA decarboxylase leading to formulation of an asymmetric model for Na+-translocating glutaconyl-CoA decarboxylases published in the Journal of Biological Chemistry.

CAVER in FEBS Letters

January 25, 2010

CAVER has been used for identification of two paths leading from the prolyl oligopeptidase active site to the outside solvent published in FEBS Letters.

CAVER in PLoS ONE

January 11, 2010

CAVER has been used for analysis of channels in the G protein coupled receptor rhodopsin published in the PLoS ONE.

CAVER in Nature Chemical Biology

December 7, 2009

CAVER has been used for analysis of tunnels in haloalkane dehalogenase published in the Nature Chemical Biology.

CAVER in JBC

October 14, 2009

CAVER has been used for analysis of tunnels in cytochrome P450 2B1 published in the Journal of Biological Chemistry.

CAVER in PNAS

July 7, 2009

CAVER has been used for analysis of exit pathways in the tungsten–iron–sulfur enzyme acetylene hydratase and periplasmic nitrate reductase published in the Proceedings of the National Academy of Sciences of the United States of America.



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